MmuALTD1042855-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000045757 | Zfp764
Description
zinc finger protein 764 [Source:MGI Symbol;Acc:MGI:2443580]
Coordinates
chr7:127406166-127406558:-
Coord C1 exon
chr7:127406458-127406558
Coord A exon
NA
Coord C2 exon
chr7:127406166-127406279
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGATG
5' ss Score
4.44
3' ss Seq
TTTGCTATTTTTCCCTTCAGGAC
3' ss Score
11.72
Exon sequences
Seq C1 exon
CCTGTAAACCCGAGGCTGTGAGCTTCGCGGACGTGGCCGTGTACTTCTCCCCGGAGGAGTGGAGGTGTCTGCGGCCGGCGCAGAGAGCCCTGTACCGAGAG
Seq A exon
NA
Seq C2 exon
GACTTGGAGGCGCCAAACCAGCACTCATCTGCTGGGTGGAGGAAGAGTCCGAAGTGTGGGGACCCTGTGCACAGGATCCAGAGGTGGCCATGTGCAGGACAGAAGTCCACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045757-0-0,1-0,2-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=66.1)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAGCCCTGTACCGAGAG
R:
GACTTCTGTCCTGCACATGGC
Band lengths:
128-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types