MmuALTD1042865-1/3 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000069206 | Zfp874a
Description
zinc finger protein 874a [Source:MGI Symbol;Acc:MGI:3040703]
Coordinates
chr13:67449350-67451491:-
Coord C1 exon
chr13:67451391-67451491
Coord A exon
NA
Coord C2 exon
chr13:67449350-67449476
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TTCACTTGTCCTTATTTCAGGAA
3' ss Score
9.97
Exon sequences
Seq C1 exon
TCCCAGGGTCTGTGCGGGGTGCATAGTTCCGGAAGGAACAGGGACCGGATGGAATGGGAGCTGGGAAGAGCTGATTTGGAGGAGCTTTCTGGACAGGGCTG
Seq A exon
NA
Seq C2 exon
GAAATGCTGTCCTTCTGGGATGTGGCCATTGATTTTTCTCCAGAAGAGAAAGAATGCCTGGAGCCTGCTCAGTGGGATCTGTACAGGGATGTGATGCTGGAGAATTTCAGCCACCTTGATTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069206-1-1,2-1,3-1-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAATGGGAGCTGGGAAGA
R:
GGTGGCTGAAATTCTCCAGCA
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types