MmuEX0000626 @ mm9
Exon Skipping
Gene
ENSMUSG00000086333 | 1700120E14Rik
Description
RIKEN cDNA 1700120E14 gene [Source:MGI Symbol;Acc:MGI:1920856]
Coordinates
chr18:74682212-74690778:-
Coord C1 exon
chr18:74690717-74690778
Coord A exon
chr18:74684794-74685530
Coord C2 exon
chr18:74682212-74682907
Length
737 bp
Sequences
Splice sites
3' ss Seq
GAAGCCTCTACTCTTCTCAGTCA
3' ss Score
3.1
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AGGTTCCCAGGATAGCCCAAACAGTCTGGATTCATAAAATGAATCTCAGGTCAACTCAGCAG
Seq A exon
TCAACAGATCTATTGAAAACAAGAGGATCTCGACGTCTAACACGCAAAGACAGTGTGTGAACTATGTCTAAGAGCTTCATTGTGTGGGCCAAGGAAGACTTTAGCCCTCTCTTCTCTCCACCCCGGAATCCCAGGACAGAGTCACTGGTATCAGAGTGTCAAGTGGTAGTGTTTATTGCCAAGCACGGTCATGGGTGTTAAAGAAGGCAGAGCCACAGACAGCGCGTCTATTCTCTCATCCCTGCAGACCAAGGAATCTGCAAACAGAACCAGGGCACAAGCTTCCTCAGTGCCGGGCTCTAACTTGGCCCACGGCTTCTTGAGGCAGAGGGCATTTCTCCGCAGAGCATGCTAACACTTCTTGATACTGATGTGGCCGGGAGAGAGCTGGAGACAATACCACACCTGAGACTATGCTGCGACTCCCTCTTTGGTTTGAGGCCAATCATTTACTAAGTGGCAACTAACTCTTAAAAGTAGGACACACAGGAAGCTGACAGTCCAAGCACCATTGAGAGATGAATAAGCTCTGGAGACTAGATCATGGTCTGGTGGCTTTGGTTAACAATACTGCATTCCAAACACAGCTGGAAGGTCTGGTGTGAGGTTGTCCTGCCACGTTAAGCCAGACACCAGACAGGAAACACCAATGGGACAGTGACACGTGGTCATAAAACCAACCTTAGCTGACCCCATGGAGGTATACACCTTAGGAGTATGTACTCTTTCAGAGTAAG
Seq C2 exon
ACATGATATCACTGCACCTGAAAAGTCACAGATTTAGCTAGATCTGCTGACTAGCAAGCTCTAGCCATCCTCCTGCCTCTGGTTCCTCAGAGCTGGGATCGCAGGTGTCCACTACCACTCTTGGCTTGTTCTGTGAATGCCAAGGATCTAGGTCCTCACGGTTGCGCAATGAGTTCTTTAATGCATGAGCCATTTCCTTGGATCCTCTAACTCTCCAACTCAAATGTGACTTTTGTAACCTGAAAATGTTCACTCGAGTCAGTCACACTCCATGAACACAGAATCTCAAGGACAGGGACCAGTAAGGAAGCAAGCTGTGATAGCCAGCCTTGGTTTTCATCTTGACTCCATCTGGAATCATGTAACACCTAAGCAGCTGCACACCTGATTAGGATTTTCTTGAATGGATCATTTGAAGTGAGGGAAAGCACCCTAGATCTGGGTACATCGTGTACCCCCACGTCTAAGGACATGGAAGGAGGAGGCTTACCTTTTGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000086333_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATAGCCCAAACAGTCTGGA
R:
ACTGGTCCCTGTCCTTGAGAT
Band lengths:
357-1094
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: