MmuEX0001044 @ mm10
Exon Skipping
Gene
ENSMUSG00000064308 | 2410137M14Rik
Description
RIKEN cDNA 2410137M14 gene [Source:MGI Symbol;Acc:MGI:1924047]
Coordinates
chr17:36978469-36981237:-
Coord C1 exon
chr17:36981140-36981237
Coord A exon
chr17:36978651-36978933
Coord C2 exon
chr17:36978469-36978546
Length
283 bp
Sequences
Splice sites
3' ss Seq
CCTCTGACTCTTCTCCTCAGACT
3' ss Score
8.86
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCATTTGGAGGAGCTGATGCGCCTCGCCAGGAGGATCTTAATACTCGGTCAAATCGAACTGTGGACCCTGTTCGGCTATCATAGCCAGAGAGAGAATG
Seq A exon
ACTCCCCCCAAAACAAATGTGGCCCATCATTCAACGCTTGAAGGTGATGTCACCCTGAGATGCTGGGCCCTGGATTTCCACCCTGCTGTCATCATCCTGACCTGGCAGAGGGATGAGAAGGACCTGACTCAGGACATGGACCTTGTGGAGACCAGGCCTGCAGAGGACGAAGCCTTCCAGAAGTGGGCAGCTGTGGTGCTGCCTTCAGGAGAAGAGCATAAATACACATGCCATGTGCAACCTGAGGGGCTGTCTGAACCTCTCATCCTGAAATGGAGTAAAG
Seq C2 exon
AGCCATCTTTTTCTCCCACCACACCCATCACGGGGATCACTGCTGGTCTGGTTCTCCTTCCAGTTTTGGTCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064308-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.200 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0765410=C1-set=WD(100=87.4)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGGAGGAGCTGATGCGC
R:
CAGTGACCAAAACTGGAAGGAGA
Band lengths:
172-455
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types