MmuEX0001046 @ mm9
Exon Skipping
Gene
ENSMUSG00000074832 | 2410141K09Rik
Description
RIKEN cDNA 2410141K09 gene [Source:MGI Symbol;Acc:MGI:1924053]
Coordinates
chr13:66534615-66542061:-
Coord C1 exon
chr13:66541956-66542061
Coord A exon
chr13:66538047-66538203
Coord C2 exon
chr13:66534615-66534741
Length
157 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTTCATATTCTAGCTC
3' ss Score
8.86
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
AAGATTGCTGTGGCTGTGCAGGCTTGAATGGTTCTCTGTGTCCTGCTCTGAGATCTGCTGTCGGGTGCATTGAGGGGACCTCAGGAAGCTCTGAGATTTAGACATG
Seq A exon
CTCCAGTTTCAATTCTAACTTTCCAGAATGGTGGACAGTGATCTGACTGAACCATGTACAACAACCATCTACTGCCTGAGATGCTTTTGCTTGCAGGAGTCTATTCAGCAGCAGAGTAGCAAGTTAGAACAACAACAACAAAAATTGGTATATAAAG
Seq C2 exon
GATGCAATGACTTTTGACGATGTGCATGTGAACTTCACTAAAGAAGAGTGGAATTTGCTGGAACCTTCCCAGATGAATCTCTACAAAGACGTGATGTTGGAGACCTACTGGAACCTTACTTCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074832_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF058336=FbpA=PU(50.9=63.6)
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATTGCTGTGGCTGTGCAG
R:
AGTAAGGTTCCAGTAGGTCTCCA
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: