MmuEX0001489 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127292887-127298940:+
Coord C1 exon
chr3:127292887-127293026
Coord A exon
chr3:127297378-127297531
Coord C2 exon
chr3:127298797-127298940
Length
154 bp
Sequences
Splice sites
3' ss Seq
ATTTTGTCTCTGCTCCCCAGAAT
3' ss Score
8.6
5' ss Seq
TCTGTATGT
5' ss Score
3.86
Exon sequences
Seq C1 exon
GAGAGGATTTGATTTTCAGAGAAAACAGTGTGGTAAACTAAAGAAGCTAACTACTGTAAATCCTGACTTTTACAGTGAAACAAAAAGTAAGATTTATCTTAAGCTGAGTCGGAGGGAGAGCTCTTCAGTTTATAGTAAAG
Seq A exon
AATCTTATCCCATGGGAATTCTCGGATTATGGACATAACCCACCTCACCTAACTTTTTATGTGGGCTCTGATGACCAAGCTCAGGCCGTCGGGCTTGACCAGCAAGCGCTCTCACCTCGTGGCAGTTGGTGTTTGTTTGTTGAGATGGGCTTCT
Seq C2 exon
GTGATCTTTGGGTTATTTCAAAAACCCTAGACTTTGAACTAGATACTTTCATTGCATGCAGTGCCTTCTTTGGGCCATCTTCTGTCAATGAAGTGGAGCTGCTGCCTTTGAAAGGTTATTTCCCTTCTAATTGGCCCACCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'22-16,'22-15,24-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGTGGTAAACTAAAGAAGCT
R:
TGGTGGGCCAATTAGAAGGGA
Band lengths:
257-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: