MmuEX0001767 @ mm9
Exon Skipping
Gene
ENSMUSG00000026774 | 4931423N10Rik
Description
RIKEN cDNA 4931423N10 gene [Source:MGI Symbol;Acc:MGI:1918231]
Coordinates
chr2:23096444-23112523:+
Coord C1 exon
chr2:23096444-23096474
Coord A exon
chr2:23100597-23100645
Coord C2 exon
chr2:23112451-23112523
Length
49 bp
Sequences
Splice sites
3' ss Seq
CTGTACCTTTTGCTCTGAAGGCT
3' ss Score
6.4
5' ss Seq
GAGGTTCGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
CATTTCAGAGTTCTGAAAACTCTTCAATCAG
Seq A exon
GCTTATCAACAAAGCTGATGCTGAAGTGACCTCACCTACGGCAAATGAG
Seq C2 exon
AAAGTGATTGAAATGCAAGACCCTTTTACAACCAATGAAGCAAGCGTGGAGAAGACACAAACCCGCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026774-'6-8,'6-7,7-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.588 C2=0.960
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(1.5=9.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: