MmuEX0002203 @ mm10
Exon Skipping
Gene
ENSMUSG00000079499 | 6530402F18Rik
Description
RIKEN cDNA 6530402F18 gene [Source:MGI Symbol;Acc:MGI:1923470]
Coordinates
chr2:29245107-29253006:-
Coord C1 exon
chr2:29252259-29253006
Coord A exon
chr2:29251347-29251459
Coord C2 exon
chr2:29245107-29248878
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCAAGAGCCCAACTTTTTGGGGC
3' ss Score
-6.31
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GGGCCCCAAAAGTTTGCACTTGTTAACAGCGACCTCCCGATCGGCCCGGGAGGGCCATGCAAGCCGCGCGGTTGGCCCCCTTCCCTGGCCCGCGTCTCCGGGACGGCTGCGGGCGGGCCCCCCGGCGGCCCGAGGGTTCCCCAGCCCAGATCTGAGGGTGGCCACCGCAGCGGCGGCGCGGGGCAGGAGTCTCCAGCTCTCAACCCTGCGGCCCGTGCGCCCACCCAGCACCAGCCAGAGGGTGGCGGTCTCCGGCCTCTCGGGGCTCGCTCCGGGAAGCTGCTCCGAGCCCGGGTAAGGCGAGCGGGGAGCGCCGGGGCGGCGGGCGGGGACGGAAGCGCCGCAGTTTCGCCAGGGTGCTTTCATTTTGAAAAGGCTTCGGCGACGGTGCCAGTTCTCCCCGGACCAGGGAGTCACTCGGAGCCTCCTAGCCGAGGTTCGGACGCAAAGTTATCTGGTGGCGGCTGCTACTAAAGGAGGGCTGGAGCCGCGGAAGAGGG
Seq A exon
GGCCCTCCCAGCCGCTGTGAGGGTGACAGGGAGAAACCAGAGTCTGGAGAAAGCTCCCTTCCCAGAACTGGGGACACCGGGACACCCGAACCCGAACGTCCACCAAGGCAGCG
Seq C2 exon
GTGCTGCTGCTAATGAACACATTCTCTCTCTTTTCTCTTCACAATGAAAGCCAAGCCTGAGCCCAGGTACCTGGATGAAGTGAGAGTTGAAGTCTCCGGAATTTCACAATAAGTGGCCAATGGCTATGAGCCAAGGTCAGCTGGCCCCCGTGCCTTGGCCCCATACCAGAGCAGAGGCAAATGGCCTCTCCAGTTAGCACCTCAGTGGCTTTTTGTATAGTCCATTCACAGGGTTGTTGTCACTTTCAGCCCATATGAAAAGAAATCTTTTTATTGGTCTGAGAGACCAAGTCCAGTCCCAAAGAGGGGACTGTGTCCATCTAACACGCCCACCTCCTGATTCCGTGTTATCTTCACCGTGCAGGCTGGTATGCGGTTGTGTGCAGCACGTCGCACATTAAGGGCCCTTTAAAGACCTGGATTGATTGGAAGGACAAAAATTAAAAGCAATCTGATCCAGCCCCATGCCGGATCCCTGCAGATTTCCTCCTTATCCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079499-'2-5,'2-4,6-5=AN
Average complexity
A_C3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTTATCTGGTGGCGGCTG
R:
TGAGGTGCTAACTGGAGAGGC
Band lengths:
258-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types