MmuEX0002355 @ mm9
Exon Skipping
Gene
ENSMUSG00000056004 | 9330182L06Rik
Description
RIKEN cDNA 9330182L06 gene [Source:MGI Symbol;Acc:MGI:2443264]
Coordinates
chr5:9445364-9447821:+
Coord C1 exon
chr5:9445364-9445553
Coord A exon
chr5:9446894-9446990
Coord C2 exon
chr5:9447720-9447821
Length
97 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCAATGTCATCTAGGTG
3' ss Score
8.85
5' ss Seq
TAAGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
GGGAGAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGATTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGGGCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAG
Seq A exon
GTGTCACTGTTGACACTGCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTATAA
Seq C2 exon
GTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCCATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056004-'22-20,'22-19,23-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAAAGTAAGGGCTTCCGG
R:
GGGGACTGATATCACACCTGC
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: