MmuEX0002493 @ mm9
Exon Skipping
Gene
ENSMUSG00000056014 | A430033K04Rik
Description
RIKEN cDNA A430033K04 gene [Source:MGI Symbol;Acc:MGI:3583896]
Coordinates
chr5:139077392-139080736:+
Coord C1 exon
chr5:139077392-139077518
Coord A exon
chr5:139079006-139079019
Coord C2 exon
chr5:139080644-139080736
Length
14 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATTGCGACGAGGAGACT
3' ss Score
-13.3
5' ss Seq
AAGGTAACT
5' ss Score
9.01
Exon sequences
Seq C1 exon
GGGTTGGTGTCATTTGAAGACGTAGCAGTGGACTTCACTTGGCAGGAATGGCAGGAGCTGGATGCTGCTCAGAGGACCCTCTACAGGGACGTGATGCTGGAGAACTATAGGAGCCTGGTGTGGCTGG
Seq A exon
ACTCCATGATCAAG
Seq C2 exon
GGCACTGTTTAGCCAAACCTGAGTTGATCTCCAAGTTGGAAGAAGGATTTGAACCGTGGGGTGTTGCAGAAGCCACAGAGCAGTGCCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056014-MICROEX1
Average complexity
MIC_S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGGACGTGATGCTGGAG
R:
ACCCCACGGTTCAAATCCTTC
Band lengths:
108-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: