MmuEX0002789 @ mm9
Exon Skipping
Gene
ENSMUSG00000090623 | AL837518.1
Description
complement factor H-related 3 [Source:MGI Symbol;Acc:MGI:3647418]
Coordinates
chr1:141490331-141518808:-
Coord C1 exon
chr1:141518632-141518808
Coord A exon
chr1:141494133-141494309
Coord C2 exon
chr1:141490331-141490513
Length
177 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTTTGCTCTTTAGCTG
3' ss Score
7.09
5' ss Seq
AAGGTATTC
5' ss Score
6.8
Exon sequences
Seq C1 exon
GAAAATGTGTTTTCCATTATGTGGAGAATGGAGAATCTTCACACTGGGAAAACAACTACGTGCAGGGTCAGTCTGTAAAAGTCCAGTGTTACAATGGCTATAGTCTTCAAAATGATCAAGATATAATGACATGTACAGAGAATGGCTGGTCCCCTCCTCCCAAATGCATCCGTATCA
Seq A exon
CTGATTACTGTGTGAATCCACCTCATGTGCCAAATGCTACTATAGTAACAATGCCCATGGCCAAATATCCCTCTGGTGAGAAAATACATTATGAATGTCATAAACCTTTTGAACTATTTGGGAAAGTGGAAGTGATGTGTCAAAATGGGATGTGGACTGAACCACCAAGATGCAAAG
Seq C2 exon
ATCCAACAGGGAAATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGTATATGCATCATTATCATCAGTTGAATATCAGTGTCAGAAGTATTATCTCCTTAAAGGAAGTAAGACAATAACATGTAGAAATGGAACGTGGTCTGAGCCACCAACCTGTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000090623_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=WD(100=91.7)
C2:
PF0008415=Sushi=WD(100=88.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTACGTGCAGGGTCAGTC
R:
AAGGAGATAATACTTCTGACACTGA
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types