MmuEX0002952 @ mm9
Exon Skipping
Gene
ENSMUSG00000062017 | Abca14
Description
ATP-binding cassette, sub-family A (ABC1), member 14 [Source:MGI Symbol;Acc:MGI:2388708]
Coordinates
chr7:127359643-127367155:+
Coord C1 exon
chr7:127359643-127359902
Coord A exon
chr7:127365809-127365916
Coord C2 exon
chr7:127367039-127367155
Length
108 bp
Sequences
Splice sites
3' ss Seq
TTTGTATGTATTTTATTCAGCTC
3' ss Score
6.68
5' ss Seq
CCTGTGGGT
5' ss Score
1.37
Exon sequences
Seq C1 exon
GATACATCAGAGAAGGATTTCTTATCGTGCAGCATTCAGTAGACAAGGCCATCATGATGTATCACAGTGGCAGAGCAGCTGAAGACATATTTGCCAACACCACAATTTATGCGGAGAGATTCCCACACCCGGCCTTTATTCATGACAGCTTCTTGTGGACTTTTATTGCTATGTTTCCTTGGACAATTTTATTTACATTTACTCAAATGGCACTTGTCATAGTTGGGACCATTATGCTGGAAAAGGAAAAGAGATTAAAG
Seq A exon
CTCACATATATGTATGCATATGTACCACGTGTGTGCCTGTTTCCTGCAAAGAACAGAAGAGGGTGTTGGATCCCTGGAATGGAAGTTACAGATGGCTGTGAACATCCT
Seq C2 exon
GAATACCAGCTCATGGTGGGACTCAGTAATGCTATGCTCTGGGTTTCCTACTTCATCACCTTCTTATTGATGTATTTCATCATCATCTGTTTGCTGTGTGGGATTTTATTCCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000062017_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(19.5=100)
A:
PF126982=ABC2_membrane_3=PD(2.9=22.2),PF126982=ABC2_membrane_3=PU(0.1=0.0)
C2:
PF126982=ABC2_membrane_3=FE(21.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCCCACACCCGGCCTTTAT
R:
TCCCACACAGCAAACAGATGA
Band lengths:
245-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: