MmuEX0003612 @ mm9
Exon Skipping
Gene
ENSMUSG00000029580 | Actb
Description
actin, beta [Source:MGI Symbol;Acc:MGI:87904]
Coordinates
chr5:143666023-143667155:-
Coord C1 exon
chr5:143666916-143667155
Coord A exon
chr5:143666767-143666829
Coord C2 exon
chr5:143666023-143666461
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCGTTCTCCCATAGGAC
3' ss Score
11.74
5' ss Seq
GAGGTCTTT
5' ss Score
1.02
Exon sequences
Seq C1 exon
GGTGTGATGGTGGGAATGGGTCAGAAGGACTCCTATGTGGGTGACGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTGAAGTACCCCATTGAACATGGCATTGTTACCAACTGGGACGACATGGAGAAGATCTGGCACCACACCTTCTACAATGAGCTGCGTGTGGCCCCTGAGGAGCACCCTGTGCTGCTCACCGAGGCCCCCCTGAACCCTAAGGCCAACCGTGAAAAGATGACCCAG
Seq A exon
GACTCCCTTCTATGAGCTGAGTCTCCCTTGGATCTTTGCAGTTTCTGCTCTTTCCCAGACGAG
Seq C2 exon
ATCATGTTTGAGACCTTCAACACCCCAGCCATGTACGTAGCCATCCAGGCTGTGCTGTCCCTGTATGCCTCTGGTCGTACCACAGGCATTGTGATGGACTCCGGAGACGGGGTCACCCACACTGTGCCCATCTACGAGGGCTATGCTCTCCCTCACGCCATCCTGCGTCTGGACCTGGCTGGCCGGGACCTGACAGACTACCTCATGAAGATCCTGACCGAGCGTGGCTACAGCTTCACCACCACAGCTGAGAGGGAAATCGTGCGTGACATCAAAGAGAAGCTGTGCTATGTTGCTCTAGACTTCGAGCAGGAGATGGCCACTGCCGCATCCTCTTCCTCCCTGGAGAAGAGCTATGAGCTGCCTGACGGCCAGGTCATCACTATTGGCAACGAGCGGTTCCGATGCCCTGAGGCTCTTTTCCAGCCTTCCTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029580_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.212 A=1.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0002214=Actin=FE(54.1=100),PF101834=ESSS=PD(78.6=68.8)
A:
PF0002214=Actin=PD(1.6=40.0)
C2:
PF0002214=Actin=FE(41.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAAGGCCAACCGTGAAAA
R:
CTCCGGAGTCCATCACAATGC
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types