MmuEX0003907 @ mm9
Exon Skipping
Gene
ENSMUSG00000043822 | Adamtsl5
Description
ADAMTS-like 5 [Source:MGI Symbol;Acc:MGI:1913798]
Coordinates
chr10:79805052-79805765:-
Coord C1 exon
chr10:79805654-79805765
Coord A exon
chr10:79805237-79805444
Coord C2 exon
chr10:79805052-79805138
Length
208 bp
Sequences
Splice sites
3' ss Seq
ATCATCTCATTTATCCGCAGCTA
3' ss Score
9.02
5' ss Seq
CCAGTGCGT
5' ss Score
5.65
Exon sequences
Seq C1 exon
AGCGCAGGCTGTGACGGGATACTGGGCTCCGGCACCCTCGAGGACCGCTGCGGCCTCTGTGGTGGCGCTAACGACTCTTGCCTGTTCGTGCAGCGCGTGTTCCGCGACGCCG
Seq A exon
CTATCGGTCCCTGAGCACAGTATCGCACCCAAAGTGTACCTTGCCGCTGCGAGCCCCAGAGCATCCCTCCCCTGCGCACCCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGCATCCCTCCCCTGCGCAACCCAGAGCGTCCCTCGCCTGTGTACCCCAGAGTATCCCTGCTCTGCGTACTCCAGAGCATACTTCCCCTGTGTACCCCA
Seq C2 exon
GTGCCTTCGCCGGCTTCTGGAATGTGACTTTGATCCCCGAGGGCGCCAGGCACATCCGCGTAGCACAGCGCAGCCACAACCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043822-'10-17,'10-15,12-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF059869=ADAM_spacer1=PU(8.2=23.7)
A:
NO
C2:
PF059869=ADAM_spacer1=FE(26.4=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGCTGTGACGGGATACT
R:
CCAGGTGGTTGTGGCTGC
Band lengths:
196-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types