MmuEX0004467 @ mm10
Exon Skipping
Gene
ENSMUSG00000026807 | Ak8
Description
adenylate kinase 8 [Source:MGI Symbol;Acc:MGI:1916120]
Coordinates
chr2:28702689-28709976:+
Coord C1 exon
chr2:28702689-28702773
Coord A exon
chr2:28708992-28709078
Coord C2 exon
chr2:28709927-28709976
Length
87 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGTGTCTGTCCCCAGAGT
3' ss Score
12.43
5' ss Seq
ACGGTGTGC
5' ss Score
5.49
Exon sequences
Seq C1 exon
AACATGTTGGAGCAGCTCCTGATCCACCAGCCGGAGGACCCCATCAGCTTCATGATCACTCACCTGCGCAGGAACAATGATAATG
Seq A exon
AGTACACAGTCATCCATGCCTCTCCACCACACGGAGTCCTTCCAGCCCCACGCGCACAGGAGAGCCTCAAGAGCATCAGGATAGACG
Seq C2 exon
TGCCGAAGGTTGTGATATTAGGTCCGCCTGCCTCAGGGAAAACCACCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026807_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.011 A=0.267 C2=0.078
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF132381=AAA_18=PU(8.8=76.5)
Main Inclusion Isoform:
ENSMUST00000074156fB364
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGCTCCTGATCCACCAG
R:
GATGGTGGTTTTCCCTGAGGC
Band lengths:
126-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types