MmuEX0005126 @ mm9
Exon Skipping
Gene
ENSMUSG00000020481 | Ankrd36
Description
ankyrin repeat domain 36 [Source:MGI Symbol;Acc:MGI:1923639]
Coordinates
chr11:5483961-5496783:+
Coord C1 exon
chr11:5483961-5484046
Coord A exon
chr11:5492831-5492867
Coord C2 exon
chr11:5496717-5496783
Length
37 bp
Sequences
Splice sites
3' ss Seq
TAGCCTTTCTTTATATTTAGAAG
3' ss Score
5.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GATGGCCTTGTACCATGTTCACCCCGCTTCAAGGAAGACAACAAAAGGATGGAGGAAAACACAGATGCAGTTGACGAGCTGGGGAG
Seq A exon
AAGTAGATGCATGTCCTGAATGCTACTCTAAAACAAG
Seq C2 exon
CTTTGCCCACAGACCTAGTAACTCTGAGCCCATAGAAGAAGAAGATGAACCTAGCTTGAGTACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020481_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.883 A=0.462 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTACCATGTTCACCCCG
R:
GGGCTCAGAGTTACTAGGTCTGT
Band lengths:
112-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: