MmuEX0006698 @ mm9
Exon Skipping
Gene
ENSMUSG00000059811 | Atl2
Description
atlastin GTPase 2 [Source:MGI Symbol;Acc:MGI:1929492]
Coordinates
chr17:80275142-80295463:-
Coord C1 exon
chr17:80295249-80295463
Coord A exon
chr17:80286940-80287056
Coord C2 exon
chr17:80275142-80275386
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAGGTCTCTGTCTTTGTCAGTGT
3' ss Score
6.55
5' ss Seq
ATGGTAACA
5' ss Score
4.87
Exon sequences
Seq C1 exon
GCTAGGACCCGCAGGCCGCCCCGCCGGCTCCCGGGAGGTTGATAAAGCGGCGGCGGCGTTTGACGTCAGTGGGGAGTTAATTTTAAATCGGTACAAGATGGCGGAGGGGGACGAGGCAGCGCGAAGGCAGCAGCCGCAGCAGGGGCTGAGGCGCCGGCGACAGACCAGCGACTCGAGCGTCGGAGTTAACCACGTCTCGTCTACGACCTCCCTAG
Seq A exon
TGTTCCTGTGTTCAACTGTATCAGTCTGGGAGGCAGGTCCCAGTACTGCTGTGAACCTCACTTAAGAGCCTGCTGATCACTCCGGAGCAGTTGTTTTCAGTCCTGCTATAGAACATG
Seq C2 exon
GTGAGGATTATGAAGATGATGACCTAGTAAACTCAGATGAGGTTATGAAGAAACCATGCCCAGTACAGATTGTTCTCGCCCATGAAGATGACCATAACTTTGAGCTTGATGAAGAGGCTTTGGAGCAGATCCTGCTGCAGGAGCACATACGGGATCTTAACATAGTCGTGGTGTCTGTGGCAGGAGCTTTCCGTAAAGGGAAATCATTTCTCCTGGACTTCATGCTTAGATATATGTATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059811-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=0.095 C2=0.146
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0226314=GBP=PU(18.8=62.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCGAGCGTCGGAGTTAAC
R:
TTTACGGAAAGCTCCTGCCAC
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: