MmuEX0006897 @ mm9
Exon Skipping
Gene
ENSMUSG00000038600 | Atp6v0a4
Description
ATPase, H+ transporting, lysosomal V0 subunit A4 [Source:MGI Symbol;Acc:MGI:2153480]
Coordinates
chr6:38043938-38074586:-
Coord C1 exon
chr6:38074328-38074586
Coord A exon
chr6:38046848-38047066
Coord C2 exon
chr6:38043938-38044071
Length
219 bp
Sequences
Splice sites
3' ss Seq
TTTGACCTCACCCACTGCAGGAT
3' ss Score
7.82
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ACTTAGAAAGATGTTGGGTCAAGGTTCTAGGAGCAGGACAGAGTGTTCCTGTCATAGTACACACTAAGTTTCCCACTAGCAGAGTCCTCGCCATGTCATTTCTACCTCCAAAGTCATCAGAGCCTGCTTGTCCACATCTGGTCCAGGTGGGAGTACAAGGAAGGCTGCTTCTACACCCATGAGCACAAATACGTCTGTGTGGGACAGTCCACTGAACGTCGTCATTTAGTCCAGCCCATTGCAGGCATTCCTGGAACAG
Seq A exon
GATGTGTTGATACAACAGAGTGGCCTCTGGAGAGGGAGCCAGGACAGTGTGTGAAGGGGGAGAGGCTGGGCAGCCTCCCTGCCACCGGGCCCTGGACCACTTGAAAGCCACAACTGACTGTGGCCACTTGCTGCTGCTACTGCTTCTGCTTCTGCTGTGCCCTGCTCCAGGAATCAGGCAGTGGGTCCCCCACACAGAACAAGCTCCAAGGAAACTCAG
Seq C2 exon
ACTAAGGCTGGACCAACATGGCATCTGTGTTTCGAAGTGAGGAGATGTGTTTATCCCAAGTGTTTCTCCAGGTGGAGGCTGCGTATTGCTGTGTAGCTGAGCTGGGAGAGCTTGGCTTGGTTCAGTTCAAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038600_MULTIEX1-2/12=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0149614=V_ATPase_I=PU(1.6=33.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGACAGAGTGTTCCTGT
R:
CCACCTGGAGAAACACTTGGG
Band lengths:
303-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types