MmuEX0006913 @ mm9
Exon Skipping
Gene
ENSMUSG00000004285 | Atp6v1f
Description
ATPase, H+ transporting, lysosomal V1 subunit F [Source:MGI Symbol;Acc:MGI:1913394]
Coordinates
chr6:29418068-29420512:+
Coord C1 exon
chr6:29418068-29418167
Coord A exon
chr6:29418967-29419226
Coord C2 exon
chr6:29420067-29420512
Length
260 bp
Sequences
Splice sites
3' ss Seq
TTTCCTCATTCCTTTTCTAGAAT
3' ss Score
11.91
5' ss Seq
AAAGTAGGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
GGGGACCGGGATGGTCCCGGAAGTCGTCTGTCCACCCTGAGCAGGGGCCTCCGCCATCTAAGTTCCCTTTTGGGGCTCAGTGGGGTCCGGCCTACCGCAG
Seq A exon
AATTACTATGCCAAATCTCAGGAATAAACTGCCCTCACCTGTTTCCCCTAAATAGCCCAGTCCAGGGATGCTGGCTGAGACTAGTTCCCACAGCCTGGAGCGTGGCAGGCTCTGACCTGGGAGACTGATCTCTTAGCAAACCAGTAAAGTGACCTCCATTGCCACTGGAGGACAGATCTTACTTCCAAGGATTTACCATGTTTCCAACAGGAAGGGGTCCTAAAATCACCAAGCCAAATCTACTCCATGCTCGACACAAA
Seq C2 exon
GCAATTTCTAAACAGGGATGACATTGGCATCATTCTCATCAACCAGTACATCGCAGAGATGGTTCGGCACGCCCTGGATGCCCACCAGAGGTCCATTCCAGCTGTCCTGGAGATCCCGTCCAAGGAGCATCCCTACGATGCAGCCAAAGACTCCATCCTGCGCAGGGCCAAGGGCATGTTCACCGCTGAAGACCTGCGCTAGGGCTGCTCAGCCCTCAGCCCTCCTCATCACCAGGCCTCTCCTGGTTTGCCATGCTCTATTTAAGTGTCAAGCCTTGGTTTCCAGCCCCTCCCTTCCTCTTCACTGAGTGGCTCGTAAGCTGTTGGGGTTCGGTTGTTCAGGTCTAGGCTGGGTAGAGAAAGAAAGCCCAACTGTTTCTCCACTGCCTCCTCCCTGTGCTGTTAATAGTATCGTTGTTGATATTAAAGGAATTATTCTCTCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004285-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
67%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.824 A=1.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0199012=ATP-synt_F=PU(3.3=5.9)
A:
NO
C2:
PF0199012=ATP-synt_F=PD(54.9=82.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCGCCATCTAAGTTCCCT
R:
GAGAGGCCTGGTGATGAGGAG
Band lengths:
295-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types