MmuEX0007063 @ mm10
Exon Skipping
Gene
ENSMUSG00000069895 | Atxn1l
Description
ataxin 1-like [Source:MGI Symbol;Acc:MGI:3694797]
Coordinates
chr8:109735305-109737739:-
Coord C1 exon
chr8:109737631-109737739
Coord A exon
chr8:109735460-109735525
Coord C2 exon
chr8:109735305-109735363
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTCCTTCAGTTT
3' ss Score
11.35
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
GGTGCCCGCTGGGTGTGGGGCGGCTCCGGGGCCGGGGATGGCGGCGGCCGCGGTGGCGGCGGCTCCGGGACGAGCGGGAGGAGTCCTGGGAGCTCCGTGAGATGGGCCG
Seq A exon
TTTCCTGGGCACTCGGGTATACGTGCTGTTACCACTGGGTTGAGAATGAAGCAAGAACTTAGGGAG
Seq C2 exon
GCTCCCAAACCAGAGGGGAGGACACGTACTGCAGCTGCTCAGCCCCACCAGACGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069895-'1-2,'1-0,2-2=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTGTCATTTCCCATGAGAAA
R:
TCTGGTGGGGCTGAGCAG
Band lengths:
153-219
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types