MmuEX0007790 @ mm9
Exon Skipping
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122157971-122207973:+
Coord C1 exon
chr3:122157971-122158010
Coord A exon
chr3:122186799-122186910
Coord C2 exon
chr3:122207845-122207973
Length
112 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTAACTTTGATGAAGGTG
3' ss Score
5.06
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GGATCCATATCTTCTGGACCCAACTCTGGAATACGTGAAG
Seq A exon
GTGTGTGGTGTCTGGGACTGAAGACAGGATGCCTAAGGAATGCAGTGCCTTCCACGCCCTCTCTGCAGCCCTGTGCTGCTTCTATCAGCGAAAGTCTTTCTTTGGAGTCAAG
Seq C2 exon
TTCTCCAAGGAGAGGCACATCATGGACAGGACCCCTGAGAGGCTGAAAAAGGAATTGGAGGAGGAGCTGCTGCTGAGCAGCGAAGACCTACGCAGCCACGCCTGGTACCACGGCCGGATCCCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121-'3-6,'3-5,5-6
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.116
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(9.9=18.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCATATCTTCTGGACCCA
R:
GGGATCCGGCCGTGGTAC
Band lengths:
162-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types