MmuEX0008199 @ mm9
Exon Skipping
Gene
ENSMUSG00000024335 | Brd2
Description
bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]
Coordinates
chr17:34253853-34256845:-
Coord C1 exon
chr17:34255551-34256845
Coord A exon
chr17:34254431-34254511
Coord C2 exon
chr17:34253853-34254156
Length
81 bp
Sequences
Splice sites
3' ss Seq
TCCACCCATTTTTGTTTCAGATC
3' ss Score
11.03
5' ss Seq
AGTGTAAGC
5' ss Score
5.32
Exon sequences
Seq C1 exon
CCCTCTACTCCGCCCTCAAGAGGATTTCAAAGATGGAGGCGGCGGCTCTCTGAAACCCCTTTTTGGTGCTCATCCGCCTCCATCGGAGGTCTGACGCGGCTCTCGTGACCCCCCGGCGACCGCGGCGGGAAGAGGGGACCCCTGTCCACCGGCGGCAGGCCGAATTGACGACGGTGTCCAGTTTCGGGGACTGCCGGGTTTGCAGACTGCGTTCTCCTGTGGCTCGCCGGCCGGCAGAGGCCGCCGCCATTTTCCTGCTGTCGCCGCCTGCGGAGCGTGCAAAGCTGCCGGAGTTGCGGGGAGGACGGCGCAGGAGACAGCGTTCCCGCCGGTCCCGCAACGAGGCTGACGCCTGGAGGGCCAAGGGCAGCGGCCTTCCCCCCACTTCCCGGGTTATGCTGGGCCCGGCGGTGAGGGGAGCCGAGGCTACCCGGACTTCACGCAGCTGAGCGGCGGCGGTTCCCTGAGGTCAAGATGCTGCAAAACGTGACTCCCCACAA
Seq A exon
ATCTTCTCCATAAGGCTAGAGTTGTCATGTGACATTGGTTTTGTATTTATTTTAACCAAGCAGCTCGTCAAACTACCCAGT
Seq C2 exon
GCTCCCTGGGGAAGGGAATGCAGGGTTACTGGGGCTGGGCCCAGAGGCAGCAGCACCAGGGAAAAGGATTCGAAAGCCTTCTCTGCTGTATGAGGGATTTGAGAGCCCCACAATGGCTTCTGTACCAGCTTTACAACTGGCCCCTGCCAATCCACCACCCCCTGAGGTGTCCAATCCCAAAAAGCCAGGACGGGTAACAAACCAACTGCAGTACCTGCACAAGGTAGTGATGAAGGCTCTGTGGAAGCATCAGTTTGCATGGCCATTCCGGCAGCCTGTGGACGCTGTGAAGCTGGGTTTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024335-'3-7,'3-6,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(31.8=26.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCCCTGAGGTCAAGATGC
R:
GGTACAGAAGCCATTGTGGGG
Band lengths:
169-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types