MmuEX0008462 @ mm9
Exon Skipping
Gene
ENSMUSG00000057093 | C030039L03Rik
Description
RIKEN cDNA C030039L03 gene [Source:MGI Symbol;Acc:MGI:2148237]
Coordinates
chr7:28461710-28476314:+
Coord C1 exon
chr7:28461710-28462220
Coord A exon
chr7:28469870-28469951
Coord C2 exon
chr7:28476234-28476314
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTCCATATAACCGTGGAAGTCC
3' ss Score
-1.18
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
AGTGAGTGCCAGGACAGCCAGGGCTATACAGAGAAACTCTGTCTAGAAAAAACAAACAAACAAAAAACAAAAACAAAAAAATCCAAAACAAACAAACAAACTACTGAAAATTGCACAACACCCCGCATGCTTGGGTTAGGCTGACACTGTTAGTCTGTTTATTAACATCTTAGGGGTGATTCAGTGTCAATTAAGCGTGTGGTTGGAACAGGGTGTCTCCAAACAGGGATCTAGCCTTGAGTGAGGAAAGAAACCTTGCTTGGCTTTAGATCTTAGTGGATGCTGTCTTAGTTTGGGTCTTCATTGCTGTGAAGAAACACCATGACCAAGGTAACTCTTATAAAGGACAACATTTAATTGGGGCTGGCTTACAGTCTCTGAGGTTCCATCCATTATCATTGTGGAGGGAAGCATGGCAGCGTCCAGATAGGCATGATGCTGGAGGAGCTGAGAGTTCAACATTTTGATTTGAAGACTGCTAGAAGACTCAGCATCTTCAG
Seq A exon
TCCTGGAACTCATTCTGTAGACCAGACTTACCTACAAACTCAGGGCTGTGCCTGCTTCTGTCTCCTGATTGCTCGTTAAAGG
Seq C2 exon
GGTTGTGCCCACCAGACCTGTGCGCACCATGCATGTGCCTTGAGAGGCCTGAAGAGGGCGCCAACTCCCCTGAAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057093_MULTIEX1-2/3=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTCTCTGAGGTTCCATCCA
R:
CTCTCAAGGCACATGCATGGT
Band lengths:
176-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: