MmuEX0008597 @ mm9
Exon Skipping
Gene
ENSMUSG00000073418 | C4b
Description
complement component 4B (Chido blood group) [Source:MGI Symbol;Acc:MGI:88228]
Coordinates
chr17:34866345-34866851:-
Coord C1 exon
chr17:34866749-34866851
Coord A exon
chr17:34866521-34866610
Coord C2 exon
chr17:34866345-34866443
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTTGCCGCCTTTCTCTAGATC
3' ss Score
9.65
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
Exon sequences
Seq C1 exon
GTCCCTACCACCCGGGAGTGTGTGGGCTTCGGAGCCTCGCAGGAGGTGGTTGTGGGACTGGTGCAGCCATCCAGTGCTGTCCTGTATGACTACTACAGCCCTG
Seq A exon
ATCACAAGTGCTCTGTGTTTTATGCTGCACCCACCAAGAGCCAGCTCCTGGCCACACTGTGCTCTGGAGATGTATGCCAGTGCGCTGAGG
Seq C2 exon
GGAAGTGCCCTCGACTGCTAAGGTCACTGGAGCGAAGGGTGGAGGACAAGGACGGCTACCGGATGAGGTTCGCCTGCTATTATCCCCGAGTGGAGTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073418-'37-39,'37-38,38-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=FE(37.8=100)
A:
PF076779=A2M_recep=PD(7.8=22.6)
C2:
PF0175916=NTR=PU(9.9=32.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGTGTGGGCTTCGGAG
R:
CGGGGATAATAGCAGGCGAAC
Band lengths:
176-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: