MmuEX0009001 @ mm10
Exon Skipping
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25945134-25956327:-
Coord C1 exon
chr2:25956247-25956327
Coord A exon
chr2:25945728-25945822
Coord C2 exon
chr2:25945134-25945273
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTGAGACAGGGT
3' ss Score
4.19
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
Exon sequences
Seq C1 exon
GTAAATCTTAAAATGAGAGAGATAACAGAGAAAGAAGTTAAATTAAAACAGCAGCCACTGGAAAGTCCCGCTCATCAAAAG
Seq A exon
GGTTTTATACCTGACTGTCCTGGAACTTGCTCAGTAGACTAGGCTGGCCTGGAACTCCTCAGAGATCTGCCTGCCTTTTCCCCTTGGGATTAAAG
Seq C2 exon
ATATCTGTCTGAAGGAGGTGCCATCAATGGCTGACAGCCTCTATAACATCCGCCTTCTGAGGGAGTTTTCCAACGAGCATCTGAACAAGTGTTTCTATCTCACGCTGGAGGATATGCTGTATGCCCCCCTAGTGCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933_MULTIEX2-5/5=1-C2
Average complexity
C3*
Mappability confidence:
83%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.259 A=0.071 C2=0.006
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF119713=CAMSAP_CH=PD(50.0=89.4)
Main Inclusion Isoform:
ENSMUST00000143977fB782
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAATTAAAACAGCAGCCACTGGA
R:
GCATACAGCATATCCTCCAGCG
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types