MmuEX0009061 @ mm9
Exon Skipping
Gene
ENSMUSG00000058626 | Capn11
Description
calpain 11 [Source:MGI Symbol;Acc:MGI:1352490]
Coordinates
chr17:45790455-45796274:-
Coord C1 exon
chr17:45796194-45796274
Coord A exon
chr17:45794195-45794311
Coord C2 exon
chr17:45790455-45790705
Length
117 bp
Sequences
Splice sites
3' ss Seq
CAAATGTGTACTCATCCCAGGTA
3' ss Score
5.04
5' ss Seq
TGGGTAACT
5' ss Score
4.34
Exon sequences
Seq C1 exon
CAACTGTCAAGGACTGTGCTAGGTGCTAGCTGTTCTAGGTGTTCATCTGATAGATAGCCTTCAGGATGCTGAACTACTCAG
Seq A exon
GTAAGAGAGACCCCAACAAGAGACGGAGGTACGATTCCACCAAAGTCCAAGTTGTCGAGCTGATGGGTTTATTGGCCTTATCTGCATGTGAAGAGTTCCTCACAGGAGCATGGATGG
Seq C2 exon
ACATCTCTTGGGCTGAAAAAGGAATGGTGGCTACCATAAACCACTCCAGGCTCAAGGACAAGGGCGTGGGCCAACACCAAAATGCCTACAACTATAAGAATCAGAACTATGAGGACCTTCGAGCAGAGTGTCTCAGGAAGGGGGAACTGTTCGAAGACCCCTTTTTCCCTGCTGAACCCAGGTCTATCGGTGTCAAGAACCTGGGCCCCAACTCTGAACACATGCAGAATATCTACTGGCAGCGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058626_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.125 A=0.150 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064816=Peptidase_C2=PU(11.3=40.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGGACTGTGCTAGGTGC
R:
GTTCAGCAGGGAAAAAGGGGT
Band lengths:
253-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: