MmuEX0009444 @ mm10
Exon Skipping
Gene
ENSMUSG00000039648 | Kyat1
Description
kynurenine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:1917516]
Coordinates
chr2:30191925-30194112:-
Coord C1 exon
chr2:30194054-30194112
Coord A exon
chr2:30192188-30192285
Coord C2 exon
chr2:30191925-30192072
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTTGAATATAAATGTTTCAGACC
3' ss Score
4.35
5' ss Seq
GAGGTGTGT
5' ss Score
6.14
Exon sequences
Seq C1 exon
CTCACCATGTCCAAACAGCTGCAGGCTCGAAGGCTGGAAGGGATCGATCACAACCCCTG
Seq A exon
ACCATAGGTCAAAGTTTGAAGTCTCCTGGGCTAAGCCATATGATTGGTACAGGACCTGGCCACCTTAAAACATGGGAACCACACATGTGGAGGTAGAG
Seq C2 exon
GGTGGAGTTTACCAGACTGTCCAAGGAGTATGATGTCGTGAACTTGGGCCAGGGCTTCCCTGACTTCTCACCGCCAGACTTTGCTGTGCAAGCTTTTCAGCAGGCTACCACTGGGAACTTCATGCTCAACCAGTACACCTCAGCGTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039648_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015516=Aminotran_1_2=PU(10.1=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCTGGAAGGGATCGATCA
R:
GCTGAGGTGTACTGGTTGAGC
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types