MmuEX0010402 @ mm9
Exon Skipping
Gene
ENSMUSG00000021279 | Cdc42bpb
Description
CDC42 binding protein kinase beta [Source:MGI Symbol;Acc:MGI:2136459]
Coordinates
chr12:112549698-112551632:-
Coord C1 exon
chr12:112551538-112551632
Coord A exon
chr12:112549848-112549917
Coord C2 exon
chr12:112549698-112549777
Length
70 bp
Sequences
Splice sites
3' ss Seq
CAATTCCTCGTGGTCTCCAGGAG
3' ss Score
6.48
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
Exon sequences
Seq C1 exon
CAAACTGAAGGAATCGGAAGCGAAAAACAGGGAATTGTTAGAAGAAATGCAAAGTCTGAGGAAGAGGATGGAAGAGAAGTTTAGAGCGGATACAG
Seq A exon
GAGCTCTGTTGGAGCCTCTGCGGTGTTCAGTCATGTCCTATCAGAGCCTCAGTGACTGGAGTCCTGGCAG
Seq C2 exon
GGCTCAAACTTCCAGATTTCCAGGATTCTATCTTTGAGTATTTCAACACTGCTCCTCTTGCACATGATCTGACTTTTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021279-'19-26,'19-25,20-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.356 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(8.7=93.9),PF088265=DMPK_coil=PD(48.4=90.9)
A:
PF0157614=Myosin_tail_1=PD(0.6=8.3)
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACTGAAGGAATCGGAAGCG
R:
TCAGATCATGTGCAAGAGGAGC
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: