Special

MmuEX0010869 @ mm9

Exon Skipping

Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:34987776-34989631:+
Coord C1 exon
chr2:34987776-34987876
Coord A exon
chr2:34988489-34988632
Coord C2 exon
chr2:34989478-34989631
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTCTGATCCTCTTGGATAAGGTT
3' ss Score
2.5
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GAGGGAAGTGCACATGAATTTGAAGACAGACTTAGAAAGCTTTGCGCAGCCTGTTTTTGTTCCCCACGGCTCTGTCATAACAGGAAAGATTCGGAGTTAAG
Seq A exon
GTTGGAGTCTTGGGAGCCTTGAGGGGAAGGAAGGCAGATGTCTCTCTCGGGAATTATTTTGTCTCCAAATGAACTGTTGCCTAAGGAAACCAGTCAAGACATTTGATTGACGTGAGATTCAGGCTTACATTTCTGAAGTGGAAG
Seq C2 exon
TCCCACATGAAAGCCCAGAAGAGGGGCAAAGAACAGCAGCTTGACATTATGAACAGACAGTACACACAGCTCGAAAGCCGCCTGGACGAGATACTTTGTAGAATTGCCAAAGAGACTGAAGAGATCAAGGACCTTGAACAGCAGCTTACAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-'14-16,'14-15,16-16
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.373
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF059116=DUF869=PU(73.1=98.0),PF138511=GAS=PU(41.3=90.0)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028237





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr9:123884855-123885000 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr8:112446936-112447072 
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
AGGGAAGTGCACATGAATTTGA

				
R: 
AGCTGCTGTTCAAGGTCCTTG

				
Band lengths: 
246-390

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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