MmuEX0011087 @ mm9
Exon Skipping
Gene
ENSMUSG00000033898 | Cfhr2
Description
complement factor H-related 2 [Source:MGI Symbol;Acc:MGI:3611575]
Coordinates
chr1:141700744-141710193:-
Coord C1 exon
chr1:141710011-141710193
Coord A exon
chr1:141701945-141702054
Coord C2 exon
chr1:141700744-141700957
Length
110 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTACCTCCCCTCTAGGAG
3' ss Score
10.58
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
ACTCAACAAGGACATGTGGGCCTCCTCCACCTATTGACAATGGAGACATCACCTCCTTGTCATTACCAGAATATGAACCATTATCATCAGTTGACTATCAGTGCCAGAAGTATTATCTCCTTAAGGGAAATAAGACAATAACATGTAGAAATGGAAATTGGTCTGAGCCACCAATGTGCTTAC
Seq A exon
GAGTCTACTGTGCTTTAAGTCTGGATATACATCTAGGGGAAACTATTGGTTATCCCAGAGGGATATTGTGGATATTGCCTCTCGTTTCCTTCAGAGTCAGTCACTGCTAG
Seq C2 exon
GTATGGCACTGCAACTCATTTGCTCTCAGAAACCTAAGGAGAGGCTATCATCCTGAGAGATGACCTGGACTCTCTCTTTGAAATGAGACAAACCCACACCATGGATGGTACCCCAGCGAGACCCCAAAGCAGAGACCCGAAAGGAATGACTGTGATCACATTTTGACATTTACTTGTTTATTGCTGTTTATGAATAAATTAGTTGTTATAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033898_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=88.7)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAACAAGGACATGTGGGC
R:
AGAGTCCAGGTCATCTCTCAGG
Band lengths:
256-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: