MmuEX0011400 @ mm9
Exon Skipping
Gene
ENSMUSG00000057337 | Chst3
Description
carbohydrate (chondroitin 6/keratan) sulfotransferase 3 [Source:MGI Symbol;Acc:MGI:1858224]
Coordinates
chr10:59650821-59682008:-
Coord C1 exon
chr10:59681652-59682008
Coord A exon
chr10:59656841-59656993
Coord C2 exon
chr10:59650821-59651066
Length
153 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCTCTACTCTCTAGGGA
3' ss Score
9.25
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GTGCGCGTGTGGAGTGAGGTGGGGAGTCTGGAGGAGAGGCGCGGGGCTCCCAAAGTTGCAGCTGCCGGCTCAGGAGGCCGCCTCCGGTCGCTAGCGGGATCGGAGTCGTGGGTAGGACCGATCGTTCGCCTGCAGCTAGGACACCGCCCGCCTGGCGCCGCTTCCCGCCCAGCGAGGGGACCAGCCCGGCCGCGCCTCCCTCCCCGCACTAGCCGAGGACGCAGAGTGGGCGCCGTGGGGAGCGCAGCCCCAGCATTTTCTGAGCCGAGAGCGCAGTTGGGGGCGGATGCTGCCGGGGCTGGACGCCGACCTCCGGAGTGTCGGATCCGCCCGCCGGGAGGAGGAGGCTCGACCGGG
Seq A exon
GGATTCAGGAACCCCGGCTCCCTGCTTCCTACTGGGTGACACAGAGGGATCAGCCCTCTGGCCTCACAACTTTCCCACAGCAGCCAGATCTTCCCTCTGCCTGTGGAGCCCCGTGGAGCCGCGTTTTTTCTACTTGGAAAGCTGTATATACAG
Seq C2 exon
GATCAGAGTGTCCCCCACCTGAAGAGGGCTGATTGGGTCCCAAGCTATGCTCCTGAGCTGAGTGCCTGCAGCCAGTCTGAGGAACTCCATGGCGCCCCCTCTCCCCATGGAGAAAGGACTCGCTTTGCCTCAGGATTTCCGGGACCTTGTACACAGCCTAAAGATTCGAGGCAGATACGTCTTGTTCCTGGCATTTGTGGTCATAGTTTTTATCTTCATTGAAAAGGAAAATAAAATCATATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057337-'0-5,'0-1,3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCATTTTCTGAGCCGAGAGC
R:
GGAAATCCTGAGGCAAAGCGA
Band lengths:
246-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: