MmuEX0011401 @ mm9
Exon Skipping
Gene
ENSMUSG00000037347 | Chst7
Description
carbohydrate (N-acetylglucosamino) sulfotransferase 7 [Source:MGI Symbol;Acc:MGI:1891767]
Coordinates
chrX:19636686-19674647:+
Coord C1 exon
chrX:19636686-19638334
Coord A exon
chrX:19666907-19666966
Coord C2 exon
chrX:19674091-19674647
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATTTCCCATTTGGTTTTCAGGTA
3' ss Score
10.42
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GCGCCACGCGCTGATTTCTTCTTAACCAGCGCGCTTGAGGTGATCTGTGAAGCGTGGCTTCGCGACCTGCTATTCACCCGCGGCGCGCCCGCCTGGCTGAGGCGTCGCTACCTGCGGCTGCGTTATGAGGACCTGGTGTGGCAGCCCCAAGCCCAGCTGCGCCGCCTGCTGCGCTTCTCTGGGTTGCGGACACTCGCCGCGCTTGATGCCTTCGCATTCAATATGACGCGGGGCTCGGCCTACGGCGCCGATCGTCCCTTCCACTTGTCTGCGCGGGACGCCCGAGAGGCTGTGCACGCCTGGCGCGAACGTCTGAGCCAAGAGCAGGTGCGCCAAGTGGAAACCGCCTGCGCCCCTGCCATGCGTCTGCTTGCCTACCCTCGAAGTGGGGACGAACGCGACAGGAAGACCGTCAGGGAAGGGGAGACACCACTGGAGACCAAGGCCAATTGGGCTGTGTAATACCCTGATCCCTGAACCCTGCCCCGGGGCGTATTCAG
Seq A exon
GTATGGTTGAACATAACCATAATCGCAGTCCTCCCAAGTCTAAGGCAGGAGAATCACAAG
Seq C2 exon
GTCAGTGGCCATAAAAAGGTGAACTCAGCATGCTGCCCCCGCACTGGAGAGGCTGCACGGTGGAGGCGATCTATCACACTGTGAGACACTGGGACTGATTTGGTATCAACTGCTGTGCCATTCTCCTGGTCAGGAGCATCACAAGCTGTTAAGTAATGACAGACACCTTGGCTGAGATGAAGTTTCCAGAAAGGAAGTAACAGTGCAATGTGGATATTTGTGACCACAACATAGGAAAAGCTGTACTTCCCAGGCTGAACTTGGCTCAGCTTGAGCCATTTCAACAAGGCATCCTCACAATAATGAAGAGATGTGATCTGGTTTCCTTTCACATCAGCAGATGTCTGGACAAAACCATCAATGTGAATAAGGGCCAAGTGCAGTTGTGTCTCTCTTGATTAAATTACTTCATATTAAATAAAAGGTCTGGCTGGTATTGTTTCCTAAAGGCCTCACCCAGCTCTCCTTCAATTAGCAGTCTTCCTGTAGAACCATTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037347_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0068522=Sulfotransfer_1=WD(100=73.8)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCCTGATCCCTGAACCCTG
R:
AGTCCCAGTGTCTCACAGTGT
Band lengths:
134-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: