MmuEX0011627 @ mm9
Exon Skipping
Gene
ENSMUSG00000053063 | Clec12a
Description
C-type lectin domain family 12, member a [Source:MGI Symbol;Acc:MGI:3040968]
Coordinates
chr6:129300262-129309529:+
Coord C1 exon
chr6:129300262-129300529
Coord A exon
chr6:129303665-129303853
Coord C2 exon
chr6:129309426-129309529
Length
189 bp
Sequences
Splice sites
3' ss Seq
AAAAAAAAAAAAACCTGGAGTTT
3' ss Score
-15.12
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
Exon sequences
Seq C1 exon
GTGGCTCATAGACACATATTTGAGAGTCTGGCATAGTGGTTTTTCAAAAGGAAATTTGAGCTTGTGAGGTTAGCCACAGTTTACAGAGGGTTGAAAGTCTAGGTAGGCTTACTTAACTGTCAGCCCTCTCACCTTTTTCGAAGGACATTTTCTGGAGCCTTCTTTGAATATTCATCAATGTCTGAAGAAATTGTTTATGCAAATCTCAAAATCCAGGACCCTGATAAAAAAGAAGAAACCCAGAAGTCTGACAAATGTGGGGGAAAAG
Seq A exon
TTTATACAACTTTGGCAACAGAAATGATAAAATCGAATCAATTGCAAAGGGCCAAGGAAGAACTTCAGGAAAATGTTTCCCTACAGCTGAAGCACAATCTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCTGTGCCGAGAGCTGTATAGCAAAGAACCAG
Seq C2 exon
GAATTTATAAAGTACAAGAAGCTACGCTATTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGATGTTCCTCTCTGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053063_MULTIEX1-2/4=C1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.452 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF154661=DUF4635=PU(12.6=45.2)
A:
PF154661=DUF4635=FE(54.3=100),PF0033515=Tetraspannin=FE(51.6=100),PF102344=Cluap1=PU(91.2=96.9),PF0139217=Fz=PU(59.4=98.4)
C2:
PF0005916=Lectin_C=FE(34.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGTTGAAAGTCTAGGTAGGCT
R:
TGCGATCTTTTCTGGGCAACA
Band lengths:
246-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: