MmuEX0011973 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84625228-84640685:+
Coord C1 exon
chr4:84625228-84625425
Coord A exon
chr4:84628959-84629086
Coord C2 exon
chr4:84640533-84640685
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATTTTTATTTTATTTAATAGCAT
3' ss Score
7.13
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
Seq A exon
CATAATTTAATGTGGACTACCTGTCACCAGTCATGTTTCCAAAGGAAAATGTGTTGACTTTCCCTAGCAGCTGTCAGCTGACCATGTTTGTGGAGCTTGGAGCCCATTCATGCTGGAGTTTTGACTAG
Seq C2 exon
GCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATATTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCAGAGAAGGGGACTGAAGGAAAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'8-10,'8-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.056 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTATGCTCCGACAAAGTGT
R:
TCGCCATCAACTTTTCGTTTGC
Band lengths:
254-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: