MmuEX0011974 @ mm10
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84979324-84994781:+
Coord C1 exon
chr4:84979324-84979521
Coord A exon
chr4:84984369-84984500
Coord C2 exon
chr4:84994629-84994781
Length
132 bp
Sequences
Splice sites
3' ss Seq
ATGGTTTTCTTCTCCTGTAGGTA
3' ss Score
10.93
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
Seq A exon
GTATTCTTCTATTCCTCATCTTTCTCTTAACATTCCACCACTACCTTCAATACCAGTTCCTACCCAAGACTCAACCCACCTCTGGTTCCTTCTGTCTTCCTTGCTGCTGGTTGTGGCTCTCCATAGCCTCCT
Seq C2 exon
GCACCGTTATCAACCTTGGAAACATTGATGATCTCACAGAAGTCTGAAATTGAATATTTACAGAAGAAACTGAAAGTGGCAAACGAAAAGTTGATGGCGAATAGATCTTGTGACCAGGATTTCTCAGAGAAGGGGACTGAAGGAAAACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070_MULTIEX4-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=0.000 C2=0.510
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSMUST00000047023fB1079
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGTTATGCTCCGACAAAGTGT
R:
TCGCCATCAACTTTTCGTTTGC
Band lengths:
254-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types