MmuEX0012058 @ mm9
Exon Skipping
Gene
ENSMUSG00000020953 | Coch
Description
coagulation factor C homolog (Limulus polyphemus) [Source:MGI Symbol;Acc:MGI:1278313]
Coordinates
chr12:52694725-52696478:+
Coord C1 exon
chr12:52694725-52694778
Coord A exon
chr12:52695137-52695285
Coord C2 exon
chr12:52696322-52696478
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTAACCCCTTTGGAAAACAGCGT
3' ss Score
1.1
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GTGCGTGGCTGCTGCTGCTGCTGCTGCCCCGGTTCGCGCGCGCCGAGGGAGCGG
Seq A exon
CGTCGGCGGTTCCTATATCTATCTCCCTGGGAGCCTCAAAAGAGTTTGTTCCACGTGTAGAAGTCCGAGTGTGGTTCGGTGTCTTTTCTGCGATGTAAGAGAGTTTCGCTTCTAAAATCTTACGCTTGCTTTTCTTCAAAGTAGAAATG
Seq C2 exon
TTCCCATTCCTGTCACCTGCTTTACCAGAGGCCTGGATATCCGAAAAGAGAAAGCAGATGTTCTCTGCCCAGGAGGCTGCTCTCTTGAGGAATTCTCTGTGTTTGGGAACATAGTGTATGCGTCAGTGTCCAGCATCTGCGGCGCTGCTGTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020953-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0381514=LCCL=PU(53.3=90.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: