MmuEX0012505 @ mm10
Exon Skipping
Gene
ENSMUSG00000045438 | Cox19
Description
cytochrome c oxidase assembly protein 19 [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139336189-139342674:-
Coord C1 exon
chr5:139342563-139342674
Coord A exon
chr5:139339465-139339576
Coord C2 exon
chr5:139336189-139338375
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTCTTGCTCTGAGCATCCAGTGG
3' ss Score
-1.41
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq A exon
TGGCAGTAAGAGCCAGCCTCGGTAGGCCTGTGACCTGTGGCTTCAGAGCCACAGAGGAGCCTCCCACAGTTACCATACTCATCTCTGCAACCACTGGGCAGATGGCCTGAAG
Seq C2 exon
GCAGCTGATGGCACCGGAGCCGCTAGAGAAGCTCGGCTTTAGAGACCTAATGGAAGGGAAGCCAGAGGCAAAGGATGAATGTTGAGAAGGGAGCCACAGGACCTTGTCCCCAGCCTGGAGCAGAGCTGAGCCCTTCTGCCCACAGTGCAGGGGGACCTGACACTCAGCCCGTGCTGCCCCGTGCAGGGGCTCTCCCTGGGGACTTTAGAACATGGCTCACCCCTGCAGCACACACCGAAATGTTTCCTCTGTTGACCTCGGTTCCCCTCTAGAGAGTGTGTTTTTCTTCCGTCTGTGTGTCACAGGACCCGTCAGGACTGAACCCTGCTGTGATTTGATATCCCGCCCAGAGTGGCTGTCACACCACAGAGCCCTGGCCAGCATTCCACAGCGACTCAGCCTGTCACAGATCTGAGTCCTCACACTGGAACCTGTCAATGAAACCAAGCGACAGGAAAATGTCCGCCTTTTGTGCTCACAGACTCATATCAGCTGGCTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438_MULTIEX1-4/6=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.500 C2=0.268
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCATGAGGTGTCTCCGTGAC
R:
ACGGGCTGAGTGTCAGGTC
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types