MmuEX0012506 @ mm9
Exon Skipping
Gene
ENSMUSG00000045438 | Cox19
Description
COX19 cytochrome c oxidase assembly homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1915283]
Coordinates
chr5:139814694-139818628:-
Coord C1 exon
chr5:139818517-139818628
Coord A exon
chr5:139815136-139815339
Coord C2 exon
chr5:139814694-139814796
Length
204 bp
Sequences
Splice sites
3' ss Seq
TCTGTCCCTGTCTTTGGCAGATG
3' ss Score
11.33
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTGAATGTAAAAGCTTTAAAGAAAAATTCATGAGGTGTCTCCGTGACAAGAACTATGAAAATGCTTTGTGCAGAAATGAATCTAAAGAGTATTTAATGTGCAGGATGCAAAG
Seq A exon
ATGTGGGGACATCTGCATCTCCAGACCATGAGCCACTTTCCTCCTGGTGCTTGCTTGCTGTCTGACCAGAGCCAATGAGACTCTGATCCTCGGCGTCTCCCTGGTTAGAGTGTGGCCTCCCAGCCGGTCCTCTCCTTCCATATCAGGACATTGGCACCCACAGGCCCTGGGCCCTGGGACTGTCTGCCCTTGGGGATCATGACT
Seq C2 exon
TACCCCTTCACAGTGACCTGGAGGACTCTCCTCAATGCCTTTCTGCAGTGTGAGGGTGAAGAGGTCTTACCCCCAGCTATGTGCACCCCTAAAGTCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000045438_MULTIEX1-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.026 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF067478=CHCH=WD(100=92.1)
A:
NO
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTTAAAGAAAAATTCATGAGGTG
R:
CTGTGAAGACTTTAGGGGTGCA
Band lengths:
204-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: