MmuEX0012656 @ mm10
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30409957-30413246:-
Coord C1 exon
chr2:30412983-30413246
Coord A exon
chr2:30411117-30411323
Coord C2 exon
chr2:30409957-30410075
Length
207 bp
Sequences
Splice sites
3' ss Seq
GTAGCCTGCAATCCCTGTAGGTG
3' ss Score
7.2
5' ss Seq
ATGGCAAGT
5' ss Score
3.26
Exon sequences
Seq C1 exon
GTAAAACCCCTGGGCCTCCTCAAGCCCTCCTCCTTGATGAAGGTTTCTGGTCGCTTCAAGGCCCACCAAGATGCACTGCCAAGGCTGCCTGTGCCCCCACTTCAGCAATCCCTGGACTATTACCTCAAGGCACTGCAGCCCATCGTGAGTGAGGAAGAATGGGCTCACACCAAGCAACTGGTGGATGAGTTTCAGACCTCAGGGGGCGTAGGGGAACGCCTACAGAAGGGACTGGAGCGCAGGGCCAAGAAAATGGAGAACTGG
Seq A exon
GTGTGAAGGCGCCTGTATGAGAGGGCACCCTTGTCTGTCCGCTTCCTACCACTGAAGAAGCTGAGACCTAGAGAGGTGGACCAAAGCCTACATCCTCACAGTAGCTTTCAGGAAGACCCCCGAGATGTACAGAAGGCCAGCATGCCTCAGTGCCCAGTCCTTGGCTATGAGTCAGCAGGTGGCAGTCACATGTCTTCCCTGCCTATG
Seq C2 exon
CTGTCCGAGTGGTGGCTCAAGACAGCCTATCTCCAGTTCCGCCAGCCTGTGGTCATCTACTCCAGCCCAGGAGTGATCCTGCCCAAGCAGGACTTTGTGGATCTACAGGGTCAGCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=PU(10.8=71.6)
A:
PF0075515=Carn_acyltransf=PD(0.1=0.0)
C2:
PF0075515=Carn_acyltransf=FE(22.7=100)
Main Inclusion Isoform:
ENSMUST00000102854fB1119
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTTTCTGGTCGCTTCAAGG
R:
CTGGGCTGGAGTAGATGACCA
Band lengths:
294-501
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types