MmuEX0013333 @ mm10
Exon Skipping
Gene
ENSMUSG00000067225 | Cyp2c54
Description
cytochrome P450, family 2, subfamily c, polypeptide 54 [Source:MGI Symbol;Acc:MGI:3642960]
Coordinates
chr19:40047504-40071606:-
Coord C1 exon
chr19:40071446-40071606
Coord A exon
chr19:40070168-40070344
Coord C2 exon
chr19:40047504-40047645
Length
177 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGAATTTCCCTATAGGTT
3' ss Score
9.13
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GCTCACCCTGTGATCCCACCTTCATCCTGGGCTGTGCTCCCTGCAATGTCATCTGCTCAATTATTTTCCAGGATCGTTTTGATTATAAAGATCGGGATTTTCTAAACTTGTTGGAAAAACTGGATGAAATATCCAAGATTCTGAGCACCCCCTGGTTGCAG
Seq A exon
GTTTGCAATACATTTCCTGCTCTGCTTGATTATTGTCCAGGAAGTCATAACCAATTTTTTAAAAATTATGCTTATATTAAAAATTTCCTTTTGGAGAAAATAAGGGAACATAAAGAATCATTGGATGTTACAATTCCTCGGGACTTTATTGATTATTTCCTAATTAAAGGAGCCCAG
Seq C2 exon
GAAGATGACAATCATCCTTTGAAAAATAATTTTGAACACCTGGCAATAACAGTGACTGATCTTTTTATTGGTGGGACAGAGTCAATGAGCACAACACTGAGATATGCTCTCCTACTCCTATTGAAGTACCCACATGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000067225_MULTIEX1-4/6=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
PF0006717=p450=FE(12.7=100)
C2:
PF0006717=p450=FE(10.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTGTGATCCCACCTTCAT
R:
GCTCATTGACTCTGTCCCACC
Band lengths:
247-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types