MmuEX0013383 @ mm9
Exon Skipping
Gene
ENSMUSG00000063929 | Cyp4a32
Description
cytochrome P450, family 4, subfamily a, polypeptide 32 [Source:MGI Symbol;Acc:MGI:3717148]
Coordinates
chr4:115273580-115275577:+
Coord C1 exon
chr4:115273580-115273768
Coord A exon
chr4:115274865-115275009
Coord C2 exon
chr4:115275533-115275577
Length
145 bp
Sequences
Splice sites
3' ss Seq
CATTACCATTCCTTCAACAGCAG
3' ss Score
6.69
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGAGTGTCTCTGCTCTAAGCCCGACCCGATTTGCAGACAGCCTCTCTGGCTTCCTCCAAGTGGCCTCTGTGCTCGGTCTGCTCCTGCTGCTGGTGAAAGCTGTCCAGTTCTACCTGCACAGGAAATGGCTACTCAAGGCTCTCCAGCAGTTCCCATCACCTCCTTTTCACTGGTTCTTTGGGCATGAG
Seq A exon
CAGTTCAAAGGCGAACAAGAACTAAAGGAAGTTGTGTCATGTATAGAGCACTTCCCAAGTGCTTTTCCTTGCTGGTTCTGGGGGAGCAACGCCTACTTAACTGTCTATGACCCTGACTACATGAAAGTGATTCTGGGGCGATCAG
Seq C2 exon
ATCCAAAGGCTAATGGTATCTACAGATTGCTAGCTCCTTGGATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063929_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(2.6=19.0)
A:
PF0006717=p450=FE(10.6=100)
C2:
PF0006717=p450=FE(3.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGTGTCTCTGCTCTAAGCC
R:
CAATCCAAGGAGCTAGCAATCTGT
Band lengths:
234-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: