MmuEX0013401 @ mm10
Exon Skipping
Gene
ENSMUSG00000048440 | Cyp4f16
Description
cytochrome P450, family 4, subfamily f, polypeptide 16 [Source:MGI Symbol;Acc:MGI:1917351]
Coordinates
chr17:32536995-32542791:+
Coord C1 exon
chr17:32536995-32537196
Coord A exon
chr17:32540271-32540415
Coord C2 exon
chr17:32542738-32542791
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCAACCTTCTCCATCTCCAGATC
3' ss Score
10.61
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
CAGGATGCTGCGGCTAAGTGTGTCTGGGCTGGACCTGGGCTCTGTGGTGACCTCGTCATGGCATCTTCTGCTGCTTGGAGTGGCTTCCTGGATTTTGGCCAGAATCCTTGCCTGGACTTACTCATTCTATGAGAACTGCTCCCGCCTCAGTTGTTTCCCTCAGCCTCCTAAAAAAAACTGGTTTTCAGGTCACTTGGGCATG
Seq A exon
ATCCAGAGCAATGAGGAAGGCATGCAGCTGGTTACCGAAATGGGCCAGACTTTCCAAGATGTCCATCTCTTTTGGCTGGGACCAGTGATCCCTGTGCTGAGGATTGTTGACCCTGCATTTGTTGCCCCCCTGCTCCAGGCCCCAG
Seq C2 exon
CTTTGGTGGCCCCAAAGGACATGACATTTTTACGCTTCCTGAAGCCCTGGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048440-'2-7,'2-3,3-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PU(3.0=21.2)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(3.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGATGCTGCGGCTAAGTG
R:
AGGAAGCGTAAAAATGTCATGTCCT
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types