MmuEX0013406 @ mm9
Exon Skipping
Gene
ENSMUSG00000061126 | Cyp4f39
Description
cytochrome P450, family 4, subfamily f, polypeptide 39 [Source:MGI Symbol;Acc:MGI:2445210]
Coordinates
chr17:32589668-32605628:+
Coord C1 exon
chr17:32589668-32589741
Coord A exon
chr17:32602424-32602526
Coord C2 exon
chr17:32605406-32605628
Length
103 bp
Sequences
Splice sites
3' ss Seq
CACTGGTTTATTCCCTTCAGGAG
3' ss Score
7.74
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
TTAAAGGGTTGGGGCTGTCAGACTGCACTGTCAAAGAAGCGGATCTGGATCGAGAGCGGCAGGCTGAGACCCGG
Seq A exon
GAGCTGGCCCAAAGTCAAGGATCTGAGTCCCGACAACTTCTCTGAGAAGCAGTTTCAGCAAATACCAGTAAAGAAAGAAGAAAGCCAAGAGAATTGAAAGCAG
Seq C2 exon
GATGCTGCCCCTCACCGACTACCTGTTGCAGCTTCTGGGGCTGGAGAAGACAGCCTTTCGAGTGTATGTTGTGTCGGCTCTGCTGCTATTGGTCCTTTTCTTCTTCTTCCGCCTGCTGGTGCGGGCATTCAAATTATTTAGTGACTTCCGCATTACCTGTCGCAAGCTGAGCTGCTTCCCAGAGCCTCCAGGCCGCCACTGGCTGCTGGGTCACATGAGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061126_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0006717=p450=PU(3.0=18.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGGGTTGGGGCTGTCAGA
R:
GCTCAGCTTGCGACAGGTAAT
Band lengths:
245-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: