MmuEX0013442 @ mm9
Exon Skipping
Gene
ENSMUSG00000078700 | D030028A08Rik
Description
RIKEN cDNA D030028A08 gene [Source:MGI Symbol;Acc:MGI:2441931]
Coordinates
chr11:96813895-96821595:+
Coord C1 exon
chr11:96813895-96814042
Coord A exon
chr11:96820654-96820765
Coord C2 exon
chr11:96820868-96821595
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTCTCTGAGGTAGTAA
3' ss Score
0.73
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
CTATGTGGGAGTTGGCTGGCTCTGGGGACGAGCTGTTGGCAGTGCAGGTGGCTGGCGACAAGGATGGAGTGTGAGGCCTCGAGACAGGATGGCAGGCAGCACAGAAGCCTCCGCACTCAGCAGAGCTGCGGTCCTGGCTGCTCTGAGG
Seq A exon
TAAATGGCTGGCTGAGTAACTGGGGCGCAGGAAGGAGAGGACCTGCCCCTTCTGTCTTCTCTTCTGCTAGCCTCAGACACCCTGAGTCAGGCGAGGGCCCACTGCTCCCTTG
Seq C2 exon
ATGGAGACTACAGGAGGACTCGGAATCCTCTGGGAGTGGAGTTACAGCTGGTTGAGAGCCACGTGAGTGCTGGGAATCAACCTTGGAACCTCTGGAAAAAGCGGCGAGTCAACCACAACCCATCGCTCAAGCCCCATTGCTGGGCCTGGTGACAACGCATGTCAGTCCTGCCTCAGCCCCCTGAATGCATGTTTACAGATGTGCACCAGAGCACCTGACTCAAGTTTTAAACGATCATTTTGAGCACTCCTTCTCATGGCCATTTCCCTGTAAATCAGCAGAGACACTGGGGAATGGAGCAGTTTGACTCCCATGGCTGCTGGAGTCTCCTTTACTGCCCCGTCTGTCTTGAGCAACACTGGGCTCTGTCTGTTCTTGTCTGCTTTTAGAGTGGGCTGAGCTGGTAACATAAAGGAGCAACAGCTGAGTGGCGGTGATGACGCCTTTAATCCCAGCCCTCAGGAGGCAGAGGTAGGCAGATTTCTGAGTCTCAGGCCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078700_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGGGAGTTGGCTGGCTC
R:
CCGCTTTTTCCAGAGGTTCCA
Band lengths:
251-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: