MmuEX0013486 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18333560-18344020:-
Coord C1 exon
chr16:18343988-18344020
Coord A exon
chr16:18338702-18338816
Coord C2 exon
chr16:18333560-18333660
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTCCAGCACATCTCTTGCAGTCT
3' ss Score
4.64
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
TGCGGCACCCGGAAGTCGGCGGCGGCGGAGGCG
Seq A exon
TCTACTTCTACAGAAGACCAGCTGAAACAACTAGCCTCGTAGGACTGAGCAACTACTAGATTCTTGGACTTCCCATTTACAGCTGACCATTGTTGGGGTAGTTGAACTACAGACT
Seq C2 exon
CAGGTATCACAGTTTTGGGGGCCTAGTTGCTGAAAATGGGCATGGTGGCTCACACCTTTAATCTCAGCACTTGGGAGTTAAAGGCAAGTAGTTCTTTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539-'1-3,'1-2,4-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: