MmuEX0013490 @ mm9
Exon Skipping
Gene
ENSMUSG00000013539 | D16H22S680E
Description
DNA segment, Chr 16, human D22S680E, expressed [Source:MGI Symbol;Acc:MGI:101825]
Coordinates
chr16:18316739-18324543:-
Coord C1 exon
chr16:18324450-18324543
Coord A exon
chr16:18319837-18319880
Coord C2 exon
chr16:18316739-18316827
Length
44 bp
Sequences
Splice sites
3' ss Seq
TACATGAAATACTCTTACAGACA
3' ss Score
4.62
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ACCTTGTGACCGTGTGAGCAAAGCCACCCTTGCAACCCATGTGCATCATCTTCTTTAAGTTTGATCCTCGTCCTGTTTCCAAAAATGCATACAG
Seq A exon
ACAACCTAAACAGCTTTAACAAGATTGATTGATCAGTAACCACA
Seq C2 exon
GCTCATCTTGGCAGCCAACAGAGATGAATTCTATAACAGGCCGTCCAAGTTGGCAGACTTCTGGGGGAACAACAGTGAGATCCTCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013539_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057427=NRDE=PU(11.9=94.7)
A:
NO
C2:
PF057427=NRDE=FE(11.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAACCCATGTGCATCATCT
R:
GTTGTTCCCCCAGAAGTCTGC
Band lengths:
137-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types