MmuEX0014192 @ mm10
Exon Skipping
Gene
ENSMUSG00000001482 | Def8
Description
differentially expressed in FDCP 8 [Source:MGI Symbol;Acc:MGI:1346331]
Coordinates
chr8:123445271-123447912:+
Coord C1 exon
chr8:123445271-123445411
Coord A exon
chr8:123446098-123446184
Coord C2 exon
chr8:123447788-123447912
Length
87 bp
Sequences
Splice sites
3' ss Seq
GTTCGTGTTCCATTGATCAGGAC
3' ss Score
5.94
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
ACAGGATTTCTCTGTGTAGCCTGGACTGTCCCGGAACTTGCTATGTAGACCAGGCTGTCAGCCTTAGACTTGCCAAGGTCTGAGACAAGGCCAAGGTGAAGAGTTCTGCCTGCCTCTGCCTTCCAAGTGCTTCGATTAAAG
Seq A exon
GACATAGTCACATTACCATGCCTAGGTGCAGGGCAGTCTGGGAAGTCACGTGACAAGAGTGATGCCCTCCTCATGCAGGGTGAAAGG
Seq C2 exon
GTGGGATGCTATGGAATATGATGAGAAGCTGGTTCGGTTCCGGCAGGCCCACCTCAACCCCTTCAACAAGCAGCTTGGTCCGAGGCATCATGAACAGGAACCCAGTGAGAAGGTCACTTCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001482_MULTIEX1-2/4=1-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.566 C2=0.560
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGAGACAAGGCCAAGGTGA
R:
ACCTTCTCACTGGGTTCCTGT
Band lengths:
177-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types