MmuEX0014238 @ mm9
Exon Skipping
Gene
ENSMUSG00000002668 | Dennd1c
Description
DENN/MADD domain containing 1C [Source:MGI Symbol;Acc:MGI:1918035]
Coordinates
chr17:57216364-57217933:-
Coord C1 exon
chr17:57217813-57217933
Coord A exon
chr17:57217096-57217127
Coord C2 exon
chr17:57216364-57216428
Length
32 bp
Sequences
Splice sites
3' ss Seq
TCTGCCGTTCTACCCCACAGATT
3' ss Score
10.61
5' ss Seq
TAAGTATGT
5' ss Score
4.58
Exon sequences
Seq C1 exon
AGGAAACTGAGCAGATCAGGGGCCCAGCCCCAAGCAAACACAGGCTCCCCCAGCCCCAGAAGCACTAGGGGAAAGGGCCCAGCTGGGCCAGCCCTGCAGAGACCATGGGATCCACAGAGAC
Seq A exon
ATTCAAGAGACAGGCACCAGAAAGAATCATAA
Seq C2 exon
AAGGCATCCCCCTGCCATGTTTGACTGGTTCTTTGAAGCTGGCTGCCCCAACTCCCTGGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002668-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=0.583 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0345613=uDENN=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAAGCACTAGGGGAAAGG
R:
GCAGCCAGCTTCAAAGAACCA
Band lengths:
112-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: