MmuEX0014957 @ mm9
Exon Skipping
Gene
ENSMUSG00000018581 | Dnahc11
Description
dynein, axonemal, heavy chain 11 [Source:MGI Symbol;Acc:MGI:1100864]
Coordinates
chr12:119169607-119172176:-
Coord C1 exon
chr12:119172155-119172176
Coord A exon
chr12:119171490-119171633
Coord C2 exon
chr12:119169607-119169771
Length
144 bp
Sequences
Splice sites
3' ss Seq
CTTCTTCCTCTTCTATATAGTTC
3' ss Score
7.94
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCCAGATTTGGAGAGGCTAAAG
Seq A exon
TTCCCTGAATGCTTTAATGAAGACATTCCATTTGAGACTCAGTGTTCCGAAGTTTCCCATTTTCTGTACATTGTGCATTTGGGGGTTTCTATGTTAGTTTCTCTCTACTGTGAAAAGCTGCTTCTCTGACAATGGACAAGCAAG
Seq C2 exon
CTGGTTTTGACCAAGCAGCAAAATGACTTTAAGATAGAGCTGAGGCAGCTTGAAGACGACCTTCTCCTGCGCCTCTCTGCTGCTGAGGGGAGCTTCCTGGATGACACAGACCTGGTAGAGCGCCTCGAGACGACCAAGGCCACTGCAGCAGAAATAGAGCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018581-'68-68,'68-67,69-68
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.055
Domain overlap (PFAM):
C1:
PF127812=AAA_9=FE(29.8=100)
A:
PF127812=AAA_9=PD(3.8=16.3)
C2:
PF127812=AAA_9=PD(22.8=94.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: