MmuEX0014969 @ mm10
Exon Skipping
Gene
ENSMUSG00000047369 | Dnah14
Description
dynein, axonemal, heavy chain 14 [Source:MGI Symbol;Acc:MGI:2444525]
Coordinates
chr1:181664776-181666515:+
Coord C1 exon
chr1:181664776-181664962
Coord A exon
chr1:181665992-181666068
Coord C2 exon
chr1:181666344-181666515
Length
77 bp
Sequences
Splice sites
3' ss Seq
TATTGAATACTGTATTTTAGGAA
3' ss Score
7.55
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
AACTACAGGTCGGGTTGAAATCCCAGATAACTTAAAATATCTGTTCCGCTTAGTGTCGATAATGGTGCCCCACTATAAAATGATCACTGAAGTAATTCTGTTTTCATATGGCTTCAAATCTTCACGATCACTGTCTGGAAAGATAGTTCACCTTTATGATTTAGCTGACAAGCAGCTCTCAAAACAG
Seq A exon
GAACATTATGATTTTGGCTTGAGGACCTTGAAGACAGTTCTAATAATGACAGAAAAGAAGATACTGGAGCATAAATG
Seq C2 exon
TGGTAGGGGCGAGCACCTCTCTGAGTTAGACGAGTCCCTCATCCTCATCGAGGCCATCCGAGAAGCCAGTTTGTCCAAGCTCCTTCCGGAAGATGTCCTACCTTTTGAAAAGATCATAGAAGATGTTTTTCCTAGAATAACGGTTTCAAAAATAAATCACCTTACCTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000047369_MULTIEX4-3/5=2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(27.3=100)
A:
PF127742=AAA_6=PD(8.8=76.9)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCGATAATGGTGCCCCAC
R:
TCGTCTAACTCAGAGAGGTGCT
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types